PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g018290.2.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 469aa    MW: 52373.7 Da    PI: 8.2673
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g018290.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-12120176155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  + ++ ++ k  + g ++ +e+Aa+a++ a++k++g
  Solyc07g018290.2.1 120 SIYRGVTRHRWTGRYEAHLWDnSCRRQgQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 176
                         57*******************55554455536655.779999**************98 PP

2AP247.44.7e-15219270155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Solyc07g018290.2.1 219 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 270
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-20120186No hitNo description
PfamPF008471.7E-9120176IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15120186IPR016177DNA-binding domain
PROSITE profilePS5103217.477121184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-12121185IPR001471AP2/ERF domain
SMARTSM003801.6E-22121190IPR001471AP2/ERF domain
PRINTSPR003672.2E-6122133IPR001471AP2/ERF domain
PfamPF008475.8E-10219270IPR001471AP2/ERF domain
CDDcd000183.32E-26219280No hitNo description
SuperFamilySSF541716.41E-18219280IPR016177DNA-binding domain
PROSITE profilePS5103219.045220278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18220278IPR001471AP2/ERF domain
SMARTSM003807.9E-34220284IPR001471AP2/ERF domain
PRINTSPR003672.2E-6260280IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDMNSSSCEK WLGFSLSNIN NLSPSTTNSS QLSLFQAFNS NPNTNCEVVR QNENGEPKVE  60
NMLGSCCDSN TPTSCEYGSE LKRIAATFLP TTFSDDHKEK LPLIVTQPKK PHESFGQRTS  120
IYRGVTRHRW TGRYEAHLWD NSCRRQGQSR KGRQGGYDKE EKAARAYDLA ALKYWGPTTT  180
TNFPVSNYER ELEEMKNMTR QEFVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  240
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIS RYDVKSIASS NLPVGGMSNK  300
SKSSSDETTK HVENRPNLRD QDQDRDISSA PNYTSKNLAM VNLGFGLPIK QDAFDFWSSV  360
GYNNNRSKNG LLFQGTTMNA QGTTFFSNEV NNSSVMLNEQ GYDNHDQQQQ SGGSSCEINM  420
ALNSNIATTS TTIDSTNFGN WMTPSLHSFQ SSTKNDLGPY HTPIFGME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323408.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X1
SwissprotQ6PQQ31e-140AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK4CCP00.0K4CCP0_SOLLC; Uncharacterized protein
STRINGSolyc07g018290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-124AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]